Information for 6-AVAACATGACCTA (Motif 7)

C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A
Reverse Opposite:
C G A T C T G A A C T G A C T G A C G T A G T C G T C A A C G T A T C G A C G T A C G T A C G T A C G T
p-value:1e-11
log p-value:-2.637e+01
Information Content per bp:1.844
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.4 +/- 28.0bp
Average Position of motif in Background52.6 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:AVAACATGACCTA
------TGACCT-
 C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:AVAACATGACCTA---
------TGACCTARTT
 C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AVAACATGACCTA------
-----TTGACCTANTTATN
 C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:AVAACATGACCTA---
------TGACCTTGAT
 C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:AVAACATGACCTA-
------TGACCTYA
 C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:AVAACATGACCTA-
------TGACCYCT
 C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AVAACATGACCTA--
-----ATGACCTTGA
 C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AVAACATGACCTA
GCAAAACATTACTA-
 A C G T A C G T C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AVAACATGACCTA
AGGNCANNGTGACCT-
 A C G T A C G T A C G T C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AVAACATGACCTA--
-----NTGACCTTGA
 C G T A T C G A C G T A G T C A A T G C G T C A C A G T A C T G C G T A A G T C A G T C A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A