Information for 6-WAAGTAAACA (Motif 6)

C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
Reverse Opposite:
C G A T C T A G A C G T A C G T A C G T C T G A G A T C G C A T C A G T G C A T
p-value:1e-11
log p-value:-2.711e+01
Information Content per bp:1.746
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif9.64%
Number of Background Sequences with motif1974.0
Percentage of Background Sequences with motif4.14%
Average Position of motif in Targets52.2 +/- 23.9bp
Average Position of motif in Background50.6 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:WAAGTAAACA
AAAGTAAACA
 C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:WAAGTAAACA
AAAGTAAACA
 C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:WAAGTAAACA
-AAATAAACA
 C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:WAAGTAAACA
WAAGTAAAYA
 C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-WAAGTAAACA----
CAAAGTAAACANNNN
 A C G T C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXC2/MA0846.1/Jaspar

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:WAAGTAAACA--
TAAGTAAACAAA
 C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

Foxa2/MA0047.2/Jaspar

Match Rank:7
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--WAAGTAAACA
NCTAAGTAAACA
 A C G T A C G T C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXP2/MA0593.1/Jaspar

Match Rank:8
Score:0.91
Offset:1
Orientation:forward strand
Alignment:WAAGTAAACA--
-AAGTAAACAAA
 C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T
A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

PB0015.1_Foxa2_1/Jaspar

Match Rank:9
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--WAAGTAAACA-----
AAAAAGTAAACAAAGAC
 A C G T A C G T C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:WAAGTAAACA--
TATGTAAACANG
 C G T A G T C A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G