Information for 4-GAACTTTTTGTTA (Motif 3)

A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A
Reverse Opposite:
C G A T C G T A C G T A T A G C C G T A G T C A G T C A G T C A C G T A A T C G A C G T A C G T T A G C
p-value:1e-13
log p-value:-3.136e+01
Information Content per bp:1.778
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif16.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.0 +/- 36.1bp
Average Position of motif in Background44.0 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GAACTTTTTGTTA-----
---NCNTTTGTTATTTNN
 A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GAACTTTTTGTTA----
NNNNTTTTTTTTTNAAC
 A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A A C G T A C G T A C G T A C G T
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAACTTTTTGTTA----
GNATTTTTTTTTTGANC
 A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A A C G T A C G T A C G T A C G T
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAACTTTTTGTTA
AAGAACATWHTGTTC
 A C G T A C G T A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

PB0093.1_Zfp105_1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAACTTTTTGTTA---
-NTNTTGTTGTTTGTN
 A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A A C G T A C G T A C G T
A C G T G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAACTTTTTGTTA----
TNNTCCTTTGTTCTNNT
 A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GAACTTTTTGTTA------
---NNTTTTGTTTTGATNT
 A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAACTTTTTGTTA
VAGRACAKNCTGTBC
 A C G T A C G T A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GAACTTTTTGTTA
------ATTGTT-
 A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAACTTTTTGTTA
VAGRACAKWCTGTYC
 A C G T A C G T A C T G T C G A C G T A A T G C G A C T A C G T A C G T A C G T A C G T A T C G C G A T A C G T C G T A
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C