Information for 10-GCAGAGTGGC (Motif 23)

A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C
Reverse Opposite:
T C A G G T A C A T G C G C T A G T A C A G C T G T A C C G A T C T A G T G A C
p-value:1e-4
log p-value:-1.018e+01
Information Content per bp:1.711
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif6.21%
Number of Background Sequences with motif639.6
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets44.2 +/- 29.9bp
Average Position of motif in Background50.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCAGAGTGGC-
-CCGATTGGCT
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T
A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

NFYA/MA0060.2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCAGAGTGGC---
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCAGAGTGGC------
-CTGATTGGTCNATTT
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCAGAGTGGC-
-TTRAGTGSYK
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAGAGTGGC-
CTTGAGTGGCT
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAGAGTGGC---
-CAAGATGGCGGC
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T A C G T A C G T
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCAGAGTGGC----
--TGATTGGCTANN
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCAGAGTGGC--------
-NAGANTGGCGGGGNGNA
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

PB0137.1_Irf3_2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAGAGTGGC----
GGAGAAAGGTGCGA
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAGAGTGGC
CCAGACRSVB
 A C T G G A T C C G T A C A T G C T G A C A T G C G A T A T C G A C T G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C