Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-420 | -9.673e+02 | 0.0000 | 731.0 | 83.93% | 7133.2 | 16.37% | motif file (matrix) |
svg |
2 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-402 | -9.275e+02 | 0.0000 | 759.0 | 87.14% | 8574.8 | 19.68% | motif file (matrix) |
svg |
3 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-367 | -8.467e+02 | 0.0000 | 689.0 | 79.10% | 7022.2 | 16.11% | motif file (matrix) |
svg |
4 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-366 | -8.429e+02 | 0.0000 | 792.0 | 90.93% | 11124.9 | 25.53% | motif file (matrix) |
svg |
5 |
| Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-251 | -5.789e+02 | 0.0000 | 517.0 | 59.36% | 4987.7 | 11.44% | motif file (matrix) |
svg |
6 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-232 | -5.364e+02 | 0.0000 | 496.0 | 56.95% | 4905.3 | 11.26% | motif file (matrix) |
svg |
7 |
| Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer | 1e-202 | -4.665e+02 | 0.0000 | 437.0 | 50.17% | 4196.3 | 9.63% | motif file (matrix) |
svg |
8 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-200 | -4.614e+02 | 0.0000 | 353.0 | 40.53% | 2452.0 | 5.63% | motif file (matrix) |
svg |
9 |
| Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-191 | -4.413e+02 | 0.0000 | 380.0 | 43.63% | 3158.0 | 7.25% | motif file (matrix) |
svg |
10 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-187 | -4.309e+02 | 0.0000 | 477.0 | 54.76% | 5677.4 | 13.03% | motif file (matrix) |
svg |
11 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-179 | -4.144e+02 | 0.0000 | 457.0 | 52.47% | 5340.0 | 12.25% | motif file (matrix) |
svg |
12 |
| MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-175 | -4.041e+02 | 0.0000 | 402.0 | 46.15% | 4040.8 | 9.27% | motif file (matrix) |
svg |
13 |
| Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-172 | -3.963e+02 | 0.0000 | 408.0 | 46.84% | 4278.9 | 9.82% | motif file (matrix) |
svg |
14 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-134 | -3.097e+02 | 0.0000 | 437.0 | 50.17% | 6351.3 | 14.57% | motif file (matrix) |
svg |
15 |
| NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer | 1e-129 | -2.973e+02 | 0.0000 | 385.0 | 44.20% | 5016.3 | 11.51% | motif file (matrix) |
svg |
16 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-108 | -2.502e+02 | 0.0000 | 376.0 | 43.17% | 5549.4 | 12.73% | motif file (matrix) |
svg |
17 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-102 | -2.366e+02 | 0.0000 | 265.0 | 30.42% | 2791.4 | 6.41% | motif file (matrix) |
svg |
18 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-96 | -2.218e+02 | 0.0000 | 677.0 | 77.73% | 18736.9 | 42.99% | motif file (matrix) |
svg |
19 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-44 | -1.015e+02 | 0.0000 | 369.0 | 42.37% | 9244.2 | 21.21% | motif file (matrix) |
svg |
20 |
| ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer | 1e-33 | -7.682e+01 | 0.0000 | 124.0 | 14.24% | 1731.1 | 3.97% | motif file (matrix) |
svg |
21 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-30 | -7.128e+01 | 0.0000 | 62.0 | 7.12% | 449.7 | 1.03% | motif file (matrix) |
svg |
22 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-21 | -5.022e+01 | 0.0000 | 70.0 | 8.04% | 855.5 | 1.96% | motif file (matrix) |
svg |
23 |
| PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-18 | -4.239e+01 | 0.0000 | 85.0 | 9.76% | 1394.7 | 3.20% | motif file (matrix) |
svg |
24 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-16 | -3.734e+01 | 0.0000 | 119.0 | 13.66% | 2592.7 | 5.95% | motif file (matrix) |
svg |
25 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-11 | -2.737e+01 | 0.0000 | 237.0 | 27.21% | 7665.4 | 17.59% | motif file (matrix) |
svg |
26 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-11 | -2.612e+01 | 0.0000 | 49.0 | 5.63% | 774.8 | 1.78% | motif file (matrix) |
svg |
27 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-10 | -2.515e+01 | 0.0000 | 92.0 | 10.56% | 2146.6 | 4.93% | motif file (matrix) |
svg |
28 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-10 | -2.469e+01 | 0.0000 | 61.0 | 7.00% | 1156.6 | 2.65% | motif file (matrix) |
svg |
29 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-10 | -2.440e+01 | 0.0000 | 62.0 | 7.12% | 1195.4 | 2.74% | motif file (matrix) |
svg |
30 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-10 | -2.432e+01 | 0.0000 | 103.0 | 11.83% | 2568.0 | 5.89% | motif file (matrix) |
svg |
31 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-10 | -2.401e+01 | 0.0000 | 51.0 | 5.86% | 880.0 | 2.02% | motif file (matrix) |
svg |
32 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-10 | -2.382e+01 | 0.0000 | 67.0 | 7.69% | 1369.5 | 3.14% | motif file (matrix) |
svg |
33 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-9 | -2.288e+01 | 0.0000 | 60.0 | 6.89% | 1180.7 | 2.71% | motif file (matrix) |
svg |
34 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-9 | -2.196e+01 | 0.0000 | 49.0 | 5.63% | 876.0 | 2.01% | motif file (matrix) |
svg |
35 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-9 | -2.102e+01 | 0.0000 | 25.0 | 2.87% | 273.7 | 0.63% | motif file (matrix) |
svg |
36 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-8 | -2.026e+01 | 0.0000 | 183.0 | 21.01% | 5940.0 | 13.63% | motif file (matrix) |
svg |
37 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-8 | -1.994e+01 | 0.0000 | 104.0 | 11.94% | 2822.5 | 6.48% | motif file (matrix) |
svg |
38 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-8 | -1.935e+01 | 0.0000 | 136.0 | 15.61% | 4092.6 | 9.39% | motif file (matrix) |
svg |
39 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-7 | -1.772e+01 | 0.0000 | 127.0 | 14.58% | 3845.6 | 8.82% | motif file (matrix) |
svg |
40 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-7 | -1.756e+01 | 0.0000 | 113.0 | 12.97% | 3306.0 | 7.59% | motif file (matrix) |
svg |
41 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-6 | -1.595e+01 | 0.0000 | 46.0 | 5.28% | 967.2 | 2.22% | motif file (matrix) |
svg |
42 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-6 | -1.583e+01 | 0.0000 | 131.0 | 15.04% | 4142.0 | 9.50% | motif file (matrix) |
svg |
43 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-6 | -1.546e+01 | 0.0000 | 90.0 | 10.33% | 2550.8 | 5.85% | motif file (matrix) |
svg |
44 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-6 | -1.518e+01 | 0.0000 | 18.0 | 2.07% | 202.9 | 0.47% | motif file (matrix) |
svg |
45 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-6 | -1.515e+01 | 0.0000 | 16.0 | 1.84% | 160.1 | 0.37% | motif file (matrix) |
svg |
46 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-6 | -1.508e+01 | 0.0000 | 74.0 | 8.50% | 1973.6 | 4.53% | motif file (matrix) |
svg |
47 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-6 | -1.473e+01 | 0.0000 | 179.0 | 20.55% | 6248.2 | 14.34% | motif file (matrix) |
svg |
48 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-6 | -1.469e+01 | 0.0000 | 44.0 | 5.05% | 947.9 | 2.18% | motif file (matrix) |
svg |
49 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-6 | -1.465e+01 | 0.0000 | 45.0 | 5.17% | 981.3 | 2.25% | motif file (matrix) |
svg |
50 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-6 | -1.455e+01 | 0.0000 | 55.0 | 6.31% | 1321.5 | 3.03% | motif file (matrix) |
svg |
51 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-6 | -1.436e+01 | 0.0000 | 51.0 | 5.86% | 1192.7 | 2.74% | motif file (matrix) |
svg |
52 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-5 | -1.373e+01 | 0.0000 | 20.0 | 2.30% | 272.8 | 0.63% | motif file (matrix) |
svg |
53 |
| ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer | 1e-5 | -1.353e+01 | 0.0000 | 17.0 | 1.95% | 204.8 | 0.47% | motif file (matrix) |
svg |
54 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-5 | -1.318e+01 | 0.0000 | 131.0 | 15.04% | 4355.2 | 9.99% | motif file (matrix) |
svg |
55 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-5 | -1.317e+01 | 0.0000 | 55.0 | 6.31% | 1384.7 | 3.18% | motif file (matrix) |
svg |
56 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-5 | -1.310e+01 | 0.0000 | 47.0 | 5.40% | 1109.2 | 2.55% | motif file (matrix) |
svg |
57 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-5 | -1.293e+01 | 0.0000 | 184.0 | 21.13% | 6647.7 | 15.25% | motif file (matrix) |
svg |
58 |
| Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.242e+01 | 0.0000 | 168.0 | 19.29% | 6002.7 | 13.77% | motif file (matrix) |
svg |
59 |
| Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-5 | -1.204e+01 | 0.0000 | 121.0 | 13.89% | 4037.5 | 9.26% | motif file (matrix) |
svg |
60 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-5 | -1.192e+01 | 0.0000 | 15.0 | 1.72% | 183.4 | 0.42% | motif file (matrix) |
svg |
61 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-5 | -1.179e+01 | 0.0000 | 26.0 | 2.99% | 480.5 | 1.10% | motif file (matrix) |
svg |
62 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-5 | -1.174e+01 | 0.0000 | 24.0 | 2.76% | 423.1 | 0.97% | motif file (matrix) |
svg |
63 |
| Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.147e+01 | 0.0001 | 31.0 | 3.56% | 643.8 | 1.48% | motif file (matrix) |
svg |
64 |
| Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer | 1e-4 | -1.071e+01 | 0.0001 | 14.0 | 1.61% | 179.7 | 0.41% | motif file (matrix) |
svg |
65 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.061e+01 | 0.0001 | 27.0 | 3.10% | 546.4 | 1.25% | motif file (matrix) |
svg |
66 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-4 | -1.055e+01 | 0.0001 | 46.0 | 5.28% | 1191.2 | 2.73% | motif file (matrix) |
svg |
67 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-4 | -1.053e+01 | 0.0001 | 50.0 | 5.74% | 1337.5 | 3.07% | motif file (matrix) |
svg |
68 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-4 | -1.033e+01 | 0.0002 | 37.0 | 4.25% | 885.8 | 2.03% | motif file (matrix) |
svg |
69 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-3 | -9.038e+00 | 0.0006 | 19.0 | 2.18% | 350.5 | 0.80% | motif file (matrix) |
svg |
70 |
| PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer | 1e-3 | -8.578e+00 | 0.0010 | 11.0 | 1.26% | 143.2 | 0.33% | motif file (matrix) |
svg |
71 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-3 | -8.418e+00 | 0.0011 | 58.0 | 6.66% | 1772.0 | 4.07% | motif file (matrix) |
svg |
72 |
| Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer | 1e-3 | -8.348e+00 | 0.0012 | 21.0 | 2.41% | 432.1 | 0.99% | motif file (matrix) |
svg |
73 |
| Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer | 1e-3 | -8.342e+00 | 0.0012 | 91.0 | 10.45% | 3122.5 | 7.16% | motif file (matrix) |
svg |
74 |
| Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer | 1e-3 | -8.287e+00 | 0.0012 | 21.0 | 2.41% | 434.5 | 1.00% | motif file (matrix) |
svg |
75 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.281e+00 | 0.0012 | 102.0 | 11.71% | 3593.6 | 8.25% | motif file (matrix) |
svg |
76 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -8.133e+00 | 0.0014 | 128.0 | 14.70% | 4733.9 | 10.86% | motif file (matrix) |
svg |
77 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-3 | -7.713e+00 | 0.0021 | 43.0 | 4.94% | 1238.8 | 2.84% | motif file (matrix) |
svg |
78 |
| Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-3 | -7.545e+00 | 0.0025 | 112.0 | 12.86% | 4104.0 | 9.42% | motif file (matrix) |
svg |
79 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-3 | -7.502e+00 | 0.0025 | 19.0 | 2.18% | 397.2 | 0.91% | motif file (matrix) |
svg |
80 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.353e+00 | 0.0029 | 21.0 | 2.41% | 467.7 | 1.07% | motif file (matrix) |
svg |
81 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-3 | -7.219e+00 | 0.0033 | 49.0 | 5.63% | 1503.7 | 3.45% | motif file (matrix) |
svg |
82 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-3 | -7.016e+00 | 0.0040 | 108.0 | 12.40% | 3992.5 | 9.16% | motif file (matrix) |
svg |
83 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -6.063e+00 | 0.0102 | 18.0 | 2.07% | 417.3 | 0.96% | motif file (matrix) |
svg |
84 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -5.783e+00 | 0.0133 | 117.0 | 13.43% | 4551.6 | 10.44% | motif file (matrix) |
svg |
85 |
| ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.734e+00 | 0.0139 | 60.0 | 6.89% | 2075.3 | 4.76% | motif file (matrix) |
svg |
86 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -5.655e+00 | 0.0148 | 71.0 | 8.15% | 2549.1 | 5.85% | motif file (matrix) |
svg |
87 |
| PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.321e+00 | 0.0205 | 58.0 | 6.66% | 2032.7 | 4.66% | motif file (matrix) |
svg |
88 |
| Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer | 1e-2 | -5.154e+00 | 0.0239 | 109.0 | 12.51% | 4284.6 | 9.83% | motif file (matrix) |
svg |
89 |
| Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer | 1e-2 | -5.045e+00 | 0.0264 | 16.0 | 1.84% | 391.2 | 0.90% | motif file (matrix) |
svg |
90 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-2 | -5.024e+00 | 0.0266 | 22.0 | 2.53% | 608.8 | 1.40% | motif file (matrix) |
svg |
91 |
| ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.895e+00 | 0.0299 | 50.0 | 5.74% | 1738.8 | 3.99% | motif file (matrix) |
svg |