Information for 14-GCTCCCTTGTTTG (Motif 9)

A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G
Reverse Opposite:
A G T C C G T A C G T A C G T A A G T C C G T A C T G A A C T G A C T G T A C G C G T A A C T G G T A C
p-value:1e-9
log p-value:-2.182e+01
Information Content per bp:1.926
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.2 +/- 12.7bp
Average Position of motif in Background22.4 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCTCCCTTGTTTG
---CCATTGTTYB
 A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCTCCCTTGTTTG
---CCTTTGTT--
 A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCTCCCTTGTTTG---
NNNTCCTTTGTTCTNNN
 A C G T A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCTCCCTTGTTTG
--NCCATTGTTY-
 A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G
A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCTCCCTTGTTTG
--NCCATTGTTC-
 A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCTCCCTTGTTTG---
TNNTCCTTTGTTCTNNT
 A C G T A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCTCCCTTGTTTG
---CCWTTGTYYB
 A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCTCCCTTGTTTG
---CCTTTGTTTT
 A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCTCCCTTGTTTG
---CCATTGTTTT
 A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G
A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCTCCCTTGTTTG--
NNNCCATTGTGTNAN
 A C T G A G T C A C G T A T G C A G T C A G T C A G C T A C G T A C T G A C G T A C G T A C G T C T A G A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G