Information for 4-ACGCTCCAGTGCAGAG (Motif 6)

C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
Reverse Opposite:
A G T C A C G T A G T C A C G T A C T G A G T C T G C A A G T C A C G T A C T G A T C G C T G A A C T G A G T C A C T G A C G T
p-value:1e-10
log p-value:-2.438e+01
Information Content per bp:1.911
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.8 +/- 18.4bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-ACGCTCCAGTGCAGAG
NNNANTGCAGTGCNNTT
 A C G T C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PAX9/MA0781.1/Jaspar

Match Rank:2
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----ACGCTCCAGTGCAGAG
CGTCACGCATGACTGCA---
 A C G T A C G T A C G T A C G T C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----ACGCTCCAGTGCAGAG
CGTCACGCATGACTGCA---
 A C G T A C G T A C G T A C G T C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---ACGCTCCAGTGCAGAG-
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.50
Offset:3
Orientation:forward strand
Alignment:ACGCTCCAGTGCAGAG
---BTBRAGTGSN---
 C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:ACGCTCCAGTGCAGAG
---NTCAAGTGG----
 C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---ACGCTCCAGTGCAGAG
TTCACGCATGAGTT-----
 A C G T A C G T A C G T C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:ACGCTCCAGTGCAGAG
--GCTCCG--------
 C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:9
Score:0.49
Offset:0
Orientation:forward strand
Alignment:ACGCTCCAGTGCAGAG
TTGCCCTAGGGCAT--
 C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T A C G T A C G T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:ACGCTCCAGTGCAGAG
--GCGCATGCGCAG--
 C G T A G T A C A C T G A G T C A G C T T A G C A G T C C G T A A C T G A C G T A C T G T A G C C G T A A C T G C G T A C T A G
A C G T A C G T T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G A C G T A C G T