Information for 20-STGCCTGAGACCT (Motif 16)

A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T
Reverse Opposite:
C T G A A C T G A C T G A C G T A G T C A G C T A T G C C G T A A C T G A C T G A G T C C G T A A T G C
p-value:1e-5
log p-value:-1.176e+01
Information Content per bp:1.872
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.7 +/- 22.6bp
Average Position of motif in Background64.9 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:STGCCTGAGACCT
CTGTCTGTCACCT
 A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:STGCCTGAGACCT
-TGCCTGAGGCN-
 A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:STGCCTGAGACCT
-NGCCTNAGGCN-
 A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:STGCCTGAGACCT
-NGCCTGAGGCN-
 A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T

PH0164.1_Six4/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:STGCCTGAGACCT----
ATAAATGACACCTATCA
 A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:STGCCTGAGACCT
-TGTCTGDCACCT
 A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:STGCCTGAGACCT---
---CNNTTGACCTTTG
 A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:STGCCTGAGACCT
-TGACCTTGACCT
 A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-STGCCTGAGACCT-
ATTGCCTGAGGCAAT
 A C G T A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T A C G T
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-STGCCTGAGACCT-
ANTGCCTGAGGCAAN
 A C G T A T C G A C G T A C T G A G T C G T A C C G A T A T C G C T G A A C T G G T C A A G T C A G T C A G C T A C G T
C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T