Information for 9-CWCTMAAAGC (Motif 10)

T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
Reverse Opposite:
C T A G G T A C C G A T G C A T A C G T A C G T C G T A C T A G C G A T A C T G
p-value:1e-9
log p-value:-2.152e+01
Information Content per bp:1.700
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.1 +/- 27.8bp
Average Position of motif in Background46.2 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CWCTMAAAGC
GNCTATAAAAGG
 A C G T A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CWCTMAAAGC
AASCACTCAA---
 A C G T A C G T A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CWCTMAAAGC
NSCACTYVAV--
 A C G T A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CWCTMAAAGC
RSCACTYRAG--
 A C G T A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CWCTMAAAGC
AGCCACTCAAG--
 A C G T A C G T A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CWCTMAAAGC-
-ACTGAAACCA
 T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C A C G T
A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CWCTMAAAGC
MRSCACTYAA---
 A C G T A C G T A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CWCTMAAAGC
CCACTTGAA--
 A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CWCTMAAAGC
ACCACTTAA---
 A C G T A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CWCTMAAAGC
ACCACTTAA---
 A C G T A C G T T G A C C G T A G A T C A C G T T G C A G T C A C G T A C G T A C A T G G A T C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T