Information for 6-ACTYAATCAMCTKCTG (Motif 9)

C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G
Reverse Opposite:
A G T C G T C A C T A G G T A C C G T A A C T G A C T G A C G T A C T G G C T A C A G T G C A T C T A G G T C A T A C G A G C T
p-value:1e-10
log p-value:-2.391e+01
Information Content per bp:1.685
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif24.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets57.5 +/- 25.9bp
Average Position of motif in Background53.0 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:ACTYAATCAMCTKCTG--
------CCCCCTGCTGTG
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:ACTYAATCAMCTKCTG
----SNGCACCTGCHS
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G
A C G T A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:ACTYAATCAMCTKCTG-----
------TCNCCTGCTGNGNNN
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:ACTYAATCAMCTKCTG-
-------CAGCAGCTGN
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:ACTYAATCAMCTKCTG-----
------TNTCCTGCTGTGNNG
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:ACTYAATCAMCTKCTG---
----GGCCYCCTGCTGDGH
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.59
Offset:8
Orientation:forward strand
Alignment:ACTYAATCAMCTKCTG
--------ANCAGCTG
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.58
Offset:9
Orientation:forward strand
Alignment:ACTYAATCAMCTKCTG---
---------CCTGCTGAGH
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:9
Score:0.58
Offset:7
Orientation:forward strand
Alignment:ACTYAATCAMCTKCTG-
-------NAACAGCTGG
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G

TCF3/MA0522.2/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:ACTYAATCAMCTKCTG
-----AACACCTGCT-
 C T G A A T G C A C G T A G C T C G T A G C T A C G A T A G T C G T C A G T A C G T A C C G A T A C G T A G T C C A G T A C T G
A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T