Information for 5-RCCAGCTSCCAGG (Motif 6)

C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
Reverse Opposite:
A T G C A G T C A C G T A C T G A T C G T A C G C T G A A C T G A G T C A C G T A T C G A T C G A G C T
p-value:1e-12
log p-value:-2.806e+01
Information Content per bp:1.805
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif59.4
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets64.0 +/- 23.1bp
Average Position of motif in Background54.3 +/- 40.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:RCCAGCTSCCAGG
GCCAGCTGBTNB-
C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:RCCAGCTSCCAGG
-----TTGCCAAG
C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Ascl2/MA0816.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:RCCAGCTSCCAGG
AGCAGCTGCT---
C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RCCAGCTSCCAGG
CAGCAGCTGN----
A C G T C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-RCCAGCTSCCAGG
NNGCAGCTGTC---
A C G T C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RCCAGCTSCCAGG
NNAGCAGCTGCT---
A C G T A C G T C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RCCAGCTSCCAGG
NVCAGCTGBBNN-
C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RCCAGCTSCCAGG
NNACAGCTGC----
A C G T C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RCCAGCTSCCAGG-
CTCAGCAGCTGCTACTG
A C G T A C G T A C G T C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Tcf12/MA0521.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-RCCAGCTSCCAGG
NNGCAGCTGTT---
A C G T C T G A A T G C A T G C G T C A A C T G G T A C A G C T A T G C A T G C A G T C C G T A A C T G A T C G
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T