Information for 4-AGVAAATCCTATCCCA (Motif 4)

C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
Reverse Opposite:
A C G T C T A G A C T G A C T G C G T A C G A T C G T A A C T G A C T G C G T A A C G T A G C T C G A T A C T G A G T C A G C T
p-value:1e-13
log p-value:-3.070e+01
Information Content per bp:1.712
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.1 +/- 24.5bp
Average Position of motif in Background16.3 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGVAAATCCTATCCCA
GATAACATCCTAGTAG-
 A C G T C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:2
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGVAAATCCTATCCCA
-NYTAATCCYB-----
 C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AGVAAATCCTATCCCA
---TAATCCCN-----
 C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGVAAATCCTATCCCA
NAGAACAGNCTGTNCT-
 A C G T C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A C G T

NR3C2/MA0727.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGVAAATCCTATCCCA
GGGAACATTGTGTTCCC
 A C G T C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGVAAATCCTATCCCA
-GCTAATCC-------
 C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGVAAATCCTATCCCA
--CTAATCCTCTT---
 C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGVAAATCCTATCCCA
NAGNACANNNTGTNCT-
 A C G T C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGVAAATCCTATCCCA-
GGYAGCAYDTGCTDCCCNNN
 A C G T A C G T A C G T C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGVAAATCCTATCCCA
--ATAATCCC------
 C T G A C T A G T A G C C G T A C T G A C G T A G A C T G T A C G T A C A C G T G C T A G C A T A G T C G T A C A G T C G T C A
A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T