Information for 6-GTCATAAACC (Motif 9)

T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C
Reverse Opposite:
C A T G T C A G C G A T A G C T C A G T G T C A C A G T C T A G T C G A A T G C
p-value:1e-9
log p-value:-2.299e+01
Information Content per bp:1.668
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif178.1
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets43.5 +/- 27.1bp
Average Position of motif in Background42.5 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GTCATAAACC
GTCATAAAAN
 T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAACC-
NGYCATAAAWCH
 A C G T T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0073.1_Hoxc9/Jaspar

Match Rank:3
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----GTCATAAACC--
GGAGGTCATTAATTAT
 A C G T A C G T A C G T A C G T T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:4
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----GTCATAAACC--
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GTCATAAACC
GCAATAAAA-
 T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:forward strand
Alignment:GTCATAAACC
GTCGTAAAAT
 T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0047.1_Hoxa11/Jaspar

Match Rank:7
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GTCATAAACC--
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GTCATAAACC
GGTAATAAAAA
 A C G T T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GTCATAAACC--
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C G T T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GTCATAAACC
AAGCCATAAAA-
 A C G T A C G T T A C G A G C T G A T C G T C A C A G T G T C A T C G A G C T A A G T C G T A C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T