Information for 10-TTGTATTGCT (Motif 12)

A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G G T A C G T C A C G T A A C G T C T G A G T A C C G T A C T G A
p-value:1e-7
log p-value:-1.718e+01
Information Content per bp:1.846
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif44.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets53.2 +/- 26.8bp
Average Position of motif in Background41.9 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TTGTATTGCT-
TTTTATGGCTN
 A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTGTATTGCT--
NGANTTTTATGGCTCN
 A C G T A C G T A C G T A C G T A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TTGTATTGCT
TTTTATTGC-
 A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTGTATTGCT
NTTTTATGAC-
 A C G T A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTGTATTGCT
NTTTTATTACN
 A C G T A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

Hoxd9/MA0913.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTGTATTGCT
TTTTTATTGC-
 A C G T A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTGTATTGCT---
NAATTTTATTACCNNN
 A C G T A C G T A C G T A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTGTATTGCT
TTTTTATTGG-
 A C G T A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTGTATTGCT
NTTTTATTGG-
 A C G T A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTGTATTGCT--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A G C T C G A T A C T G A G C T C G T A C G A T A C G T A C T G A G T C A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G