Information for 7-TGGTAATGAA (Motif 20)

G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A
Reverse Opposite:
A C G T C A G T G T A C T G C A A C G T A G C T G T C A A T G C A G T C C G T A
p-value:1e-10
log p-value:-2.382e+01
Information Content per bp:1.656
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif5.68%
Number of Background Sequences with motif781.7
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets49.8 +/- 30.3bp
Average Position of motif in Background48.7 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TGGTAATGAA
-GKTAATGR-
 G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

HOXA2/MA0900.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TGGTAATGAA-
-GNTAATTANN
 G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A A C G T
A C G T A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

MEOX2/MA0706.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TGGTAATGAA-
-AGTAATTAAC
 G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A A C G T
A C G T C T G A T A C G G A C T T G C A G T C A C A G T A G C T C T G A C G T A T G A C

PB0031.1_Hoxa3_1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TGGTAATGAA-
TGGAGGTAATTAAC
 A C G T A C G T A C G T G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A A C G T
C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGGTAATGAA
WATGCAAATGAG
 A C G T A C G T G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

EVX1/MA0887.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGGTAATGAA-
-GNTAATTANN
 G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A A C G T
A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

EVX2/MA0888.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TGGTAATGAA-
-NNTAATTANN
 G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A A C G T
A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

MNX1/MA0707.1/Jaspar

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGGTAATGAA-
-GGTAATTAAA
 G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A A C G T
A C G T C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TGGTAATGAA----
TAAGGTAATAAAATTA
 A C G T A C G T G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0053.1_Hoxa6/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGGTAATGAA---
NTNAGGTAATTACCTT
 A C G T A C G T A C G T G C A T T C A G T A C G C A G T T C G A T G C A A C G T C A T G G T C A T G C A A C G T A C G T A C G T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T