Information for 9-GCCAAGCATCTCAGTG (Motif 11)

A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G
Reverse Opposite:
A G T C C T G A A G T C C G A T A C T G C G T A A C T G T C G A A C G T A C T G A G T C A C G T A C G T C A T G C T A G A G T C
p-value:1e-12
log p-value:-2.766e+01
Information Content per bp:1.903
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.6 +/- 29.3bp
Average Position of motif in Background84.0 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox11/MA0869.1/Jaspar

Match Rank:1
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCCAAGCATCTCAGTG--
---AACAATTTCAGTGTT
 A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G A C G T A C G T
A C G T A C G T A C G T C G T A C G T A A G T C C G T A C G T A A C G T A G C T C A G T A G T C C G T A A C T G A C G T A C T G A C G T A G C T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGCATCTCAGTG
CGTGCCAAG----------
 A C G T A C G T A C G T A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGCATCTCAGTG
TGCCAA-----------
 A C G T A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCCAAGCATCTCAGTG--
--GAACAATTGCAGTGTT
 A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G A C G T A C G T
A C G T A C G T C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGCATCTCAGTG
GGTGCCAAGT---------
 A C G T A C G T A C G T A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GCCAAGCATCTCAGTG
ACTAGCCAATCA--------
 A C G T A C G T A C G T A C G T A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAGCATCTCAGTG
TGGACCAATCAGCACTCT-
 A C G T A C G T A C G T A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:8
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GCCAAGCATCTCAGTG--
---AACAATGGTAGTGTT
 A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G A C G T A C G T
A C G T A C G T A C G T C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GCCAAGCATCTCAGTG
--CAAGCTT-------
 A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GCCAAGCATCTCAGTG
TTGCCAAG----------
 A C G T A C G T A C T G A G T C G A T C C G T A C G T A A C T G G T A C C G T A A G C T A G T C C G A T A G T C C G T A A C T G A G C T A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T