Information for 5-GGCACTMGAG (Motif 2)

A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
Reverse Opposite:
A T G C G C A T A T G C A C G T T C G A T C A G C A G T A C T G G T A C T A G C
p-value:1e-17
log p-value:-4.009e+01
Information Content per bp:1.518
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif4.98%
Number of Background Sequences with motif439.3
Percentage of Background Sequences with motif0.92%
Average Position of motif in Targets54.0 +/- 26.2bp
Average Position of motif in Background48.6 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GGCACTMGAG
NGTGGGCAT-----
 A C G T A C G T A C G T A C G T A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------GGCACTMGAG
NNNNTTGGGCACNNCN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GGCACTMGAG
GGTTGGCAT-----
 A C G T A C G T A C G T A C G T A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCACTMGAG
NSCACTYVAV
 A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCACTMGAG
RSCACTYRAG
 A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGCACTMGAG
AGCCACTCAAG
 A C G T A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GGCACTMGAG
NTTGGCANN----
 A C G T A C G T A C G T A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCACTMGAG
NNTTGGCANN----
 A C G T A C G T A C G T A C G T A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGCACTMGAG
TTGGCA------
 A C G T A C G T A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGCACTMGAG
--AATTAGTG
 A T C G C A T G T G A C G T C A A G T C A G C T T G C A T A C G C G T A T A C G
A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G