Information for 2-CCCTRYCTGGGCC (Motif 3)

A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C
Reverse Opposite:
A C T G A T C G A G T C A T G C A G T C C G T A A C T G C T A G A G T C G T C A A C T G A C T G A T C G
p-value:1e-11
log p-value:-2.661e+01
Information Content per bp:1.908
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.4 +/- 29.0bp
Average Position of motif in Background50.1 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CCCTRYCTGGGCC
---WDNCTGGGCA
 A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C
A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CCCTRYCTGGGCC-
------CTAGGCCT
 A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCCTRYCTGGGCC--
-GGGGCCGAGGCCTG
 A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C A C G T A C G T
A C G T A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCCTRYCTGGGCC
--CTGTCTGG---
 A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCCTRYCTGGGCC-
ACATGCCCGGGCAT
 A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCCTRYCTGGGCC-----
---TGCCTGCGYCMCCTT
 A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCCTRYCTGGGCC
GGGGCTYGKCTGGGA-
 A C G T A C G T A C G T A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCCTRYCTGGGCC
VBSYGTCTGG---
 A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

SRF/MA0083.3/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCCTRYCTGGGCC
TGNCCATATATGGTCA
 A C G T A C G T A C G T A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C
G C A T A C T G G T C A G A T C A T G C C G T A C G A T T G C A A G C T G C T A G C A T T C A G A T C G C A G T T G A C C G T A

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCCTRYCTGGGCC
CCATATATGGNA-
 A T G C A G T C A G T C C A G T C T A G A G T C A G T C A C G T A C T G A T C G C T A G A T G C G T A C
A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A A C G T