Information for 20-TGGCAGTCTTTAA (Motif 20)

A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A C G T A A C T G C T G A A G T C A C G T A T C G G T A C A G T C C G T A
p-value:1e-8
log p-value:-1.932e+01
Information Content per bp:1.941
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.0 +/- 11.3bp
Average Position of motif in Background85.1 +/- 16.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGGCAGTCTTTAA----
-GGAGGTCATTAATTAT
 A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGGCAGTCTTTAA--
-----GTCGTAAAAT
 A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGTCTTTAA
CTTGGCAA-------
 A C G T A C G T A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGGCAGTCTTTAA--
----GGTCGTAAAAT
 A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGGCAGTCTTTAA---
----GGTCGTAAAATT
 A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:TGGCAGTCTTTAA-
--------TTTAAT
 A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGTCTTTAA
TTGGCA--------
 A C G T A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGTCTTTAA
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGTCTTTAA
NTTGGCANN------
 A C G T A C G T A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGGCAGTCTTTAA--
----AGTCGTAAAAA
 A C G T A C T G A C T G T A G C C G T A A C T G A G C T A G T C A C G T A C G T A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A