Information for 18-GACCATATAA (Motif 17)

A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T C G T A A C G T A C T G A C T G A G C T A G T C
p-value:1e-10
log p-value:-2.532e+01
Information Content per bp:1.934
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets30.4 +/- 28.3bp
Average Position of motif in Background71.4 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GACCATATAA-----
TGACCATATATGGTCA
 A C G T A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GACCATATAA--
TNCCATATATGG
 A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A A C G T A C G T
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GACCATATAA
AAGCCATAAAA
 A C G T A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GACCATATAA--
GNCTATAAAAGG
 A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PH0056.1_Hoxa9/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GACCATATAA-----
ACGGCCATAAAATTAAT
 A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GACCATATAA--
--CCYMATAAAA
 A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GACCATATAA----
AGAGCCATAAAATTCG
 A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PB0078.1_Srf_1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GACCATATAA----
TTCCATATATGGAA
 A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GACCATATAA
AACCTTATAT
 A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

PH0013.1_Cdx2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GACCATATAA---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T C G T A A C G T C G T A C G T A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T