Information for 19-CTTTTAAGCA (Motif 18)

A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A
Reverse Opposite:
G A C T A C T G A G T C G A C T A G C T C G T A C G T A C T G A G T C A C T A G
p-value:1e-10
log p-value:-2.395e+01
Information Content per bp:1.838
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.98%
Number of Background Sequences with motif116.5
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets47.6 +/- 21.6bp
Average Position of motif in Background48.9 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTAAGCA
ANCGTTTANN--
 A C G T A C G T A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTTTTAAGCA-
CCTTTTATAGNC
 A C G T A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PB0184.1_Tbp_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTTTTAAGCA---
CCGATTTAAGCGACC
 A C G T A C G T A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

Barhl1/MA0877.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTAAGCA
NNCAATTANN--
 A C G T A C G T A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTAAGCA----
ANATTTTTGCAANTN
 A C G T A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PH0117.1_Nkx3-1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTTTTAAGCA-------
NATTTAAGTACTTANNA
 A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTAAGCA------
TNNATTATGCATANNTT
 A C G T A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTAAGCA
CCTTTGATGT-
 A C G T A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTTTTAAGCA
--TTTAAT--
 A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A
A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTTTTAAGCA
CAATTAA---
 A G T C C A G T A G C T A C G T A C G T C T G A C G T A C T A G A G T C C T G A
G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T