Information for 20-AGAMATMGYTCATCMC (Motif 15)

C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C
Reverse Opposite:
C T A G A C T G A C T G C G T A A C G T A C T G C G T A C T A G A G T C C A G T C G T A A C G T A C T G C G A T A G T C A C G T
p-value:1e-12
log p-value:-2.769e+01
Information Content per bp:1.880
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.2 +/- 21.3bp
Average Position of motif in Background69.6 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0123.1_Obox3/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGAMATMGYTCATCMC-----
----ATAGTTAATCCCCCNNA
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0122.1_Obox2/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGAMATMGYTCATCMC-----
----ATAGTTAATCCCCCTCA
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PH0035.1_Gsc/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGAMATMGYTCATCMC----
---AATCGTTAATCCCTTTA
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGAMATMGYTCATCMC-----
----NTTGTTAATCCCTCTNN
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGAMATMGYTCATCMC-----
----NTAGTTAATCCCCTTAN
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

NFE2/MA0841.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGAMATMGYTCATCMC
---CATGACTCATC--
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C
A C G T A C G T A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AGAMATMGYTCATCMC---
---GNNAGCTAATCCCCCN
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGAMATMGYTCATCMC--
---GARTGGTCATCGCCC
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C A C G T A C G T
A C G T A C G T A C G T T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGAMATMGYTCATCMC
-GYCATCMATCAT---
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGAMATMGYTCATCMC
--AAYTAGGTCA----
 C G T A A C T G C G T A T G A C C G T A A C G T G T C A A C T G A G T C A C G T A G T C C G T A A C G T A G T C G T A C A G T C
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T