Information for 5-CTTTTTAACAGACTAA (Motif 7)

A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
Reverse Opposite:
A C G T A C G T C T G A A C T G A C G T A G T C A C G T A C T G A C G T C G A T C G T A G T C A G T C A G T C A C T G A A C T G
p-value:1e-11
log p-value:-2.738e+01
Information Content per bp:1.907
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.2 +/- 14.7bp
Average Position of motif in Background70.8 +/- 6.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CTTTTTAACAGACTAA
-------BCAGACWA-
 A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTTTTTAACAGACTAA
-NTTTTACGAGN----
 A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTAACAGACTAA
ANATTTTACGAGNNNN-
 A C G T A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTTTTTAACAGACTAA
NAATTTTACGAGNTNN-
 A C G T A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CTTTTTAACAGACTAA
ANNNCTAGTTAACNGNN---
 A C G T A C G T A C G T A C G T A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CTTTTTAACAGACTAA
----TTMACACCTT--
 A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTTAACAGACTAA
NTNTTCTTATCAGTNTN-
 A C G T A C G T A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTTAACAGACTAA
NNNNCTGTTAACNNTNN--
 A C G T A C G T A C G T A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A A C G T A C G T

MYBL2/MA0777.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CTTTTTAACAGACTAA
GACNGTTTAACGGTT---
 A C G T A C G T A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
C T A G C T G A T A G C T A G C A C T G C G A T A C G T G C A T C T G A G T C A G A T C A T C G A C T G G A C T G A C T A C G T A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CTTTTTAACAGACTAA
CNTGTTTACATA----
 A G T C A G C T A C G T A C G T A C G T A C G T C G T A G T C A A G T C C G T A A C T G C G T A G T A C G A C T G T C A C G T A
A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T A C G T A C G T