Information for 20-GTCTATCTCCTTG (Motif 30)

A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G
Reverse Opposite:
G T A C C G T A C G T A A C T G A C T G C T G A A C T G C T G A A G C T C G T A A C T G C G T A A T G C
p-value:1e-7
log p-value:-1.783e+01
Information Content per bp:1.934
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets67.8 +/- 12.8bp
Average Position of motif in Background42.4 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTCTATCTCCTTG
CTGTCTGTCACCT--
 A C G T A C G T A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTCTATCTCCTTG
TGTCTGDCACCT--
 A C G T A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTCTATCTCCTTG
-AAGATATCCTT-
 A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G
A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCTATCTCCTTG
---BNTGDCCTTG
 A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G
A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GTCTATCTCCTTG--
-----TGACCTTGAV
 A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GTCTATCTCCTTG--
-----TGACCTTGAN
 A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

ESRRB/MA0141.3/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GTCTATCTCCTTG-
---NATGACCTTGA
 A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G A C G T
A C G T A C G T A C G T C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A

Esrra/MA0592.2/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GTCTATCTCCTTG--
----ATGACCTTGAA
 A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GTCTATCTCCTTG---
GATAACATCCTAGTAG
 A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GTCTATCTCCTTG----
NNNNATGACCTTGANTN
 A T C G A C G T A G T C A C G T C T G A A G C T A G T C A G C T A G T C A G T C A C G T A C G T A C T G A C G T A C G T A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A