Information for 7-AYGTGGAAATTCCCAG (Motif 8)

C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
Reverse Opposite:
A G T C C G A T A C T G C T A G T A C G C T G A C G T A A C G T A C G T A C G T A G T C G T A C C G T A G T A C T C A G C G A T
p-value:1e-10
log p-value:-2.319e+01
Information Content per bp:1.730
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.0 +/- 10.0bp
Average Position of motif in Background55.8 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.71
Offset:4
Orientation:forward strand
Alignment:AYGTGGAAATTCCCAG
----GGAAATTCCC--
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AYGTGGAAATTCCCAG
----GGAAATTCCC--
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:AYGTGGAAATTCCCAG
----GGAAATCCCC--
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AYGTGGAAATTCCCAG
---GGGAAATCCCCN-
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AYGTGGAAATTCCCAG
----GGAAANCCCC--
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AYGTGGAAATTCCCAG
--GGGGGAATCCCC--
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
A C G T A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AYGTGGAAATTCCCAG
AGGTGTTAAT------
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.56
Offset:7
Orientation:forward strand
Alignment:AYGTGGAAATTCCCAG-
-------HTTTCCCASG
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AYGTGGAAATTCCCAG
AGGTGTGAAM------
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AYGTGGAAATTCCCAG
-NATGGAAAAN-----
 C G T A A G T C C A T G A C G T A C T G T A C G T G C A C G T A G T C A C G A T A G C T A T G C A G T C A G T C C G T A T C A G
A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T