Information for 7-CACGCAAACT (Motif 12)

A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T
Reverse Opposite:
G T C A A T C G A C G T A C G T A G C T A C T G T G A C A C T G A C G T A T C G
p-value:1e-9
log p-value:-2.184e+01
Information Content per bp:1.867
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif30.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets62.8 +/- 20.4bp
Average Position of motif in Background55.8 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---CACGCAAACT
TBGCACGCAA---
 A C G T A C G T A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CACGCAAACT
CACGCA----
 A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CACGCAAACT
AGCCACTCAAG--
 A C G T A C G T A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CACGCAAACT-
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CACGCAAACT--
ATATGCAAATNNN
 A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PB0075.1_Sp100_1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CACGCAAACT
ATTTTACGGAAAAT
 A C G T A C G T A C G T A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T
C T G A C G A T C G A T G C A T G A C T G T C A A T G C A T C G A C T G G C T A C G T A G C T A G C T A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CACGCAAACT
TTATGCAAAT-
 A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CACGCAAACT
GCCACRCCCACY
 A C G T A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T
T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T

KLF14/MA0740.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CACGCAAACT-
GGCCACGCCCCCTT
 A C G T A C G T A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T A C G T
C A T G T C A G G T A C A G T C T G C A G A T C T C A G A T G C A G T C A G T C G T A C G A T C G A C T G A C T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CACGCAAACT
ATATGCAAAT-
 A C G T A T G C C G T A A G T C A C T G A G T C C T G A C G T A C G T A A T G C A C G T
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T