Information for 6-GCGTTTCTGCGTG (Motif 11)

A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G
Reverse Opposite:
A T G C G T C A A G T C A C T G A G T C C G T A A C T G C G T A C G T A C G T A G T A C A C T G A G T C
p-value:1e-9
log p-value:-2.228e+01
Information Content per bp:1.937
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.5 +/- 28.7bp
Average Position of motif in Background60.2 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.61
Offset:7
Orientation:forward strand
Alignment:GCGTTTCTGCGTG
-------TGCGTG
 A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GCGTTTCTGCGTG---
------TTGCGTGCVA
 A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCGTTTCTGCGTG-
NNGCGTGTGTGCNGCN
 A C G T A C G T A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCGTTTCTGCGTG-
NCCGTTGCTANGNGN
 A C G T A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCGTTTCTGCGTG
VBSYGTCTGG---
 A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GCGTTTCTGCGTG
ACTTTCGTTTCT-----
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T A C G T A C G T A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GCGTTTCTGCGTG-
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCGTTTCTGCGTG-----
NAGTTTCABTHTGACTNW
 A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A G T C C T G A A T C G A G C T A G C T G A C T A G T C G C T A A C G T C G A T G C A T C G A T A T C G C G T A T A G C G C A T A T G C C G T A

PAX9/MA0781.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GCGTTTCTGCGTG---
TGCAGTCATGCGTGACG
 A C G T A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----GCGTTTCTGCGTG
NNGCACCTTTCTCC---
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C C T A G A C G T A T C G
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T