Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-269 | -6.216e+02 | 0.0000 | 279.0 | 39.08% | 909.8 | 2.03% | motif file (matrix) |
svg |
2 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-230 | -5.307e+02 | 0.0000 | 299.0 | 41.88% | 1590.2 | 3.56% | motif file (matrix) |
svg |
3 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-222 | -5.125e+02 | 0.0000 | 317.0 | 44.40% | 2025.8 | 4.53% | motif file (matrix) |
svg |
4 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-178 | -4.118e+02 | 0.0000 | 293.0 | 41.04% | 2300.7 | 5.14% | motif file (matrix) |
svg |
5 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-169 | -3.906e+02 | 0.0000 | 400.0 | 56.02% | 5540.5 | 12.39% | motif file (matrix) |
svg |
6 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-142 | -3.281e+02 | 0.0000 | 300.0 | 42.02% | 3340.4 | 7.47% | motif file (matrix) |
svg |
7 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-142 | -3.278e+02 | 0.0000 | 244.0 | 34.17% | 1971.9 | 4.41% | motif file (matrix) |
svg |
8 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-133 | -3.071e+02 | 0.0000 | 238.0 | 33.33% | 2029.1 | 4.54% | motif file (matrix) |
svg |
9 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-132 | -3.050e+02 | 0.0000 | 251.0 | 35.15% | 2349.0 | 5.25% | motif file (matrix) |
svg |
10 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-131 | -3.024e+02 | 0.0000 | 190.0 | 26.61% | 1128.0 | 2.52% | motif file (matrix) |
svg |
11 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-130 | -3.011e+02 | 0.0000 | 115.0 | 16.11% | 222.9 | 0.50% | motif file (matrix) |
svg |
12 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-121 | -2.802e+02 | 0.0000 | 332.0 | 46.50% | 5048.9 | 11.29% | motif file (matrix) |
svg |
13 |
| E-box(bHLH)/Promoter/Homer | 1e-95 | -2.202e+02 | 0.0000 | 97.0 | 13.59% | 266.1 | 0.60% | motif file (matrix) |
svg |
14 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-52 | -1.205e+02 | 0.0000 | 132.0 | 18.49% | 1624.6 | 3.63% | motif file (matrix) |
svg |
15 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-17 | -4.083e+01 | 0.0000 | 61.0 | 8.54% | 1001.6 | 2.24% | motif file (matrix) |
svg |
16 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-16 | -3.894e+01 | 0.0000 | 73.0 | 10.22% | 1438.5 | 3.22% | motif file (matrix) |
svg |
17 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-15 | -3.674e+01 | 0.0000 | 90.0 | 12.61% | 2127.9 | 4.76% | motif file (matrix) |
svg |
18 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-14 | -3.411e+01 | 0.0000 | 64.0 | 8.96% | 1264.0 | 2.83% | motif file (matrix) |
svg |
19 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-14 | -3.387e+01 | 0.0000 | 59.0 | 8.26% | 1101.8 | 2.46% | motif file (matrix) |
svg |
20 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-14 | -3.327e+01 | 0.0000 | 68.0 | 9.52% | 1427.1 | 3.19% | motif file (matrix) |
svg |
21 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-13 | -3.148e+01 | 0.0000 | 43.0 | 6.02% | 657.0 | 1.47% | motif file (matrix) |
svg |
22 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-13 | -3.142e+01 | 0.0000 | 52.0 | 7.28% | 934.5 | 2.09% | motif file (matrix) |
svg |
23 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-13 | -3.109e+01 | 0.0000 | 132.0 | 18.49% | 4166.0 | 9.32% | motif file (matrix) |
svg |
24 |
| GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-13 | -3.066e+01 | 0.0000 | 22.0 | 3.08% | 159.4 | 0.36% | motif file (matrix) |
svg |
25 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-12 | -2.923e+01 | 0.0000 | 49.0 | 6.86% | 891.4 | 1.99% | motif file (matrix) |
svg |
26 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-12 | -2.835e+01 | 0.0000 | 47.0 | 6.58% | 848.1 | 1.90% | motif file (matrix) |
svg |
27 |
| CRE(bZIP)/Promoter/Homer | 1e-11 | -2.719e+01 | 0.0000 | 45.0 | 6.30% | 812.2 | 1.82% | motif file (matrix) |
svg |
28 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-10 | -2.494e+01 | 0.0000 | 32.0 | 4.48% | 466.4 | 1.04% | motif file (matrix) |
svg |
29 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-10 | -2.424e+01 | 0.0000 | 47.0 | 6.58% | 958.3 | 2.14% | motif file (matrix) |
svg |
30 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-10 | -2.410e+01 | 0.0000 | 53.0 | 7.42% | 1176.2 | 2.63% | motif file (matrix) |
svg |
31 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-9 | -2.171e+01 | 0.0000 | 25.0 | 3.50% | 331.9 | 0.74% | motif file (matrix) |
svg |
32 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.682e+01 | 0.0000 | 185.0 | 25.91% | 7974.2 | 17.83% | motif file (matrix) |
svg |
33 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-7 | -1.627e+01 | 0.0000 | 18.0 | 2.52% | 235.0 | 0.53% | motif file (matrix) |
svg |
34 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-6 | -1.551e+01 | 0.0000 | 191.0 | 26.75% | 8452.7 | 18.90% | motif file (matrix) |
svg |
35 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.480e+01 | 0.0000 | 10.0 | 1.40% | 72.2 | 0.16% | motif file (matrix) |
svg |
36 |
| RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-6 | -1.426e+01 | 0.0000 | 52.0 | 7.28% | 1546.1 | 3.46% | motif file (matrix) |
svg |
37 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-6 | -1.408e+01 | 0.0000 | 22.0 | 3.08% | 396.2 | 0.89% | motif file (matrix) |
svg |
38 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-5 | -1.259e+01 | 0.0000 | 111.0 | 15.55% | 4505.4 | 10.07% | motif file (matrix) |
svg |
39 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-5 | -1.256e+01 | 0.0000 | 137.0 | 19.19% | 5873.0 | 13.13% | motif file (matrix) |
svg |
40 |
| KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer | 1e-5 | -1.167e+01 | 0.0001 | 42.0 | 5.88% | 1254.6 | 2.81% | motif file (matrix) |
svg |
41 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-5 | -1.158e+01 | 0.0001 | 67.0 | 9.38% | 2401.5 | 5.37% | motif file (matrix) |
svg |
42 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-4 | -1.124e+01 | 0.0001 | 75.0 | 10.50% | 2816.3 | 6.30% | motif file (matrix) |
svg |
43 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-4 | -1.104e+01 | 0.0001 | 8.0 | 1.12% | 67.8 | 0.15% | motif file (matrix) |
svg |
44 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-4 | -1.060e+01 | 0.0002 | 12.0 | 1.68% | 169.4 | 0.38% | motif file (matrix) |
svg |
45 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-4 | -1.031e+01 | 0.0003 | 85.0 | 11.90% | 3400.0 | 7.60% | motif file (matrix) |
svg |
46 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-4 | -1.010e+01 | 0.0003 | 19.0 | 2.66% | 404.6 | 0.90% | motif file (matrix) |
svg |
47 |
| Sp1(Zf)/Promoter/Homer | 1e-4 | -9.508e+00 | 0.0006 | 29.0 | 4.06% | 814.5 | 1.82% | motif file (matrix) |
svg |
48 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-4 | -9.497e+00 | 0.0006 | 12.0 | 1.68% | 190.4 | 0.43% | motif file (matrix) |
svg |
49 |
| KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer | 1e-4 | -9.456e+00 | 0.0006 | 117.0 | 16.39% | 5173.7 | 11.57% | motif file (matrix) |
svg |
50 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-4 | -9.408e+00 | 0.0006 | 92.0 | 12.89% | 3854.8 | 8.62% | motif file (matrix) |
svg |
51 |
| Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer | 1e-4 | -9.316e+00 | 0.0006 | 33.0 | 4.62% | 994.0 | 2.22% | motif file (matrix) |
svg |
52 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.964e+00 | 0.0009 | 42.0 | 5.88% | 1416.6 | 3.17% | motif file (matrix) |
svg |
53 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.520e+00 | 0.0014 | 40.0 | 5.60% | 1354.7 | 3.03% | motif file (matrix) |
svg |
54 |
| KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer | 1e-3 | -8.484e+00 | 0.0014 | 75.0 | 10.50% | 3074.0 | 6.87% | motif file (matrix) |
svg |
55 |
| RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-3 | -8.431e+00 | 0.0014 | 49.0 | 6.86% | 1784.4 | 3.99% | motif file (matrix) |
svg |
56 |
| NFY(CCAAT)/Promoter/Homer | 1e-3 | -8.372e+00 | 0.0015 | 45.0 | 6.30% | 1598.1 | 3.57% | motif file (matrix) |
svg |
57 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-3 | -7.783e+00 | 0.0027 | 49.0 | 6.86% | 1837.6 | 4.11% | motif file (matrix) |
svg |
58 |
| Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer | 1e-3 | -7.736e+00 | 0.0027 | 31.0 | 4.34% | 996.3 | 2.23% | motif file (matrix) |
svg |
59 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-3 | -7.378e+00 | 0.0039 | 78.0 | 10.92% | 3353.4 | 7.50% | motif file (matrix) |
svg |
60 |
| Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.332e+00 | 0.0040 | 6.0 | 0.84% | 64.8 | 0.14% | motif file (matrix) |
svg |
61 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-3 | -7.262e+00 | 0.0042 | 195.0 | 27.31% | 9912.8 | 22.16% | motif file (matrix) |
svg |
62 |
| THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer | 1e-3 | -7.070e+00 | 0.0050 | 27.0 | 3.78% | 858.3 | 1.92% | motif file (matrix) |
svg |
63 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-2 | -6.818e+00 | 0.0063 | 41.0 | 5.74% | 1529.8 | 3.42% | motif file (matrix) |
svg |
64 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-2 | -6.472e+00 | 0.0088 | 49.0 | 6.86% | 1956.9 | 4.38% | motif file (matrix) |
svg |
65 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-2 | -6.378e+00 | 0.0095 | 87.0 | 12.18% | 3964.0 | 8.86% | motif file (matrix) |
svg |
66 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.293e+00 | 0.0102 | 61.0 | 8.54% | 2590.7 | 5.79% | motif file (matrix) |
svg |
67 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -6.290e+00 | 0.0102 | 14.0 | 1.96% | 350.4 | 0.78% | motif file (matrix) |
svg |
68 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -6.143e+00 | 0.0115 | 39.0 | 5.46% | 1489.7 | 3.33% | motif file (matrix) |
svg |
69 |
| Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer | 1e-2 | -6.006e+00 | 0.0130 | 16.0 | 2.24% | 442.7 | 0.99% | motif file (matrix) |
svg |
70 |
| RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-2 | -5.938e+00 | 0.0137 | 50.0 | 7.00% | 2061.1 | 4.61% | motif file (matrix) |
svg |
71 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -5.747e+00 | 0.0164 | 67.0 | 9.38% | 2973.8 | 6.65% | motif file (matrix) |
svg |
72 |
| ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.707e+00 | 0.0168 | 47.0 | 6.58% | 1932.6 | 4.32% | motif file (matrix) |
svg |
73 |
| Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-2 | -5.497e+00 | 0.0204 | 12.0 | 1.68% | 304.0 | 0.68% | motif file (matrix) |
svg |
74 |
| EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer | 1e-2 | -5.464e+00 | 0.0208 | 16.0 | 2.24% | 468.1 | 1.05% | motif file (matrix) |
svg |
75 |
| ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-2 | -5.396e+00 | 0.0220 | 34.0 | 4.76% | 1309.5 | 2.93% | motif file (matrix) |
svg |
76 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.335e+00 | 0.0231 | 150.0 | 21.01% | 7692.7 | 17.20% | motif file (matrix) |
svg |
77 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-2 | -5.235e+00 | 0.0252 | 30.0 | 4.20% | 1127.4 | 2.52% | motif file (matrix) |
svg |
78 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-2 | -4.933e+00 | 0.0336 | 28.0 | 3.92% | 1056.0 | 2.36% | motif file (matrix) |
svg |
79 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -4.906e+00 | 0.0341 | 8.0 | 1.12% | 173.7 | 0.39% | motif file (matrix) |
svg |
80 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.843e+00 | 0.0359 | 39.0 | 5.46% | 1614.4 | 3.61% | motif file (matrix) |
svg |
81 |
| Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.843e+00 | 0.0359 | 78.0 | 10.92% | 3701.1 | 8.28% | motif file (matrix) |
svg |
82 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.781e+00 | 0.0372 | 29.0 | 4.06% | 1117.7 | 2.50% | motif file (matrix) |
svg |
83 |
| MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer | 1e-2 | -4.722e+00 | 0.0390 | 18.0 | 2.52% | 598.5 | 1.34% | motif file (matrix) |
svg |
84 |
| Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -4.688e+00 | 0.0399 | 16.0 | 2.24% | 510.9 | 1.14% | motif file (matrix) |
svg |