Information for 3-AGTGCTTGGTTTA (Motif 4)

C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
Reverse Opposite:
A G C T G T C A G T C A C G T A A T G C A G T C G T C A C T G A A C T G A G T C C G T A G T A C C G A T
p-value:1e-12
log p-value:-2.866e+01
Information Content per bp:1.817
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.1 +/- 24.1bp
Average Position of motif in Background51.8 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCTTGGTTTA
TTAAGTGCTT------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

DUX4/MA0468.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGTGCTTGGTTTA
--TGATTAAATTA
 C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
A C G T A C G T C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGTGCTTGGTTTA
TTRAGTGSYK------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGTGCTTGGTTTA--
NWTGATTRGRTTAWN
 C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A A C G T A C G T
C G T A G C A T C G A T C T A G C G T A A C G T A C G T C T G A T C A G C T A G A C G T A C G T G C T A C G T A G T A C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGTGCTTGGTTTA
CTGTTCCTGG----
 A C G T C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGTGCTTGGTTTA
CGAACAGTGCTCACTAT-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AGTGCTTGGTTTA
TTCNAAGTACTTNNNNN-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGTGCTTGGTTTA
TTGAGTGSTT------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGCTTGGTTTA
NNNNTTGTGTGCTTNN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGTGCTTGGTTTA
CTTTAAGTACTTAATG--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A G T C A G C T A C G T C T A G A T C G C G A T A C G T A C G T C T G A
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G A C G T A C G T