Information for 9-TTACATAGHAACC (Motif 11)

A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C
Reverse Opposite:
A C T G A C T G A C G T A C G T C T A G G T A C A G C T C G T A A C G T A C T G A C G T G T C A C T G A
p-value:1e-11
log p-value:-2.550e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 30.3bp
Average Position of motif in Background8.8 +/- 4.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TTACATAGHAACC--
TACCATAGCAACGGT
 A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TTACATAGHAACC
TTGCCATGGCAACC
 A C G T A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TTACATAGHAACC--
CCGCATAGCAACGGA
 A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTACATAGHAACC
GTTGCCATGGCAAC-
 A C G T A C G T A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTACATAGHAACC
TTGCCATGGCAACN
 A C G T A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TTACATAGHAACC-
--SCCTAGCAACAG
 A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TTACATAGHAACC------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTACATAGHAACC
GTTGCCATGGCAACM
 A C G T A C G T A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTACATAGHAACC
TGTTKCCTAGCAACM
 A C G T A C G T A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TTACATAGHAACC
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A G C T C A G T G T C A A G T C C G T A C G A T C T G A A C T G G A T C G T C A C G T A A G T C G T A C
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G