Information for 12-TCGCTATGGC (Motif 23)

C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T C G T A A C T G A G T C A C T G C G T A
p-value:1e-6
log p-value:-1.602e+01
Information Content per bp:1.919
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets51.8 +/- 26.7bp
Average Position of motif in Background53.3 +/- 41.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCGCTATGGC----
TTGCCATGGCAACN
 C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TCGCTATGGC----
---TAATGGCGGNC
 C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TCGCTATGGC-
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C G T C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCGCTATGGC---
GTTGCCATGGNAAC
 A C G T C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCGCTATGGC---
KGTTGCCATGGCAAC
 A C G T A C G T C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCGCTATGGC---
CGGTTGCCATGGCAAC
 A C G T A C G T A C G T C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0127.1_Gata6_2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCGCTATGGC----
GCGGCGATATCGCAGCG
 A C G T A C G T A C G T C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C A T G A T G C A T C G T C A G G T A C C A T G T G C A C A G T G T C A A C G T G T A C C A T G A T G C T G C A A T C G G A T C C A G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCGCTATGGC----
TTGCCATGGCAACC
 C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------TCGCTATGGC-----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

RFX3/MA0798.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCGCTATGGC----
CGTTGCCATGGCAACN
 A C G T A C G T C G A T A G T C A C T G G T A C C G A T C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G