Information for 1-HTATAAARGSCGCSSG (Motif 1)

G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
Reverse Opposite:
A T G C T A C G T A G C T A C G A T G C A T C G A T G C A G T C A G C T A G C T G C A T A C G T G T C A A C G T C G T A C A G T
p-value:1e-35
log p-value:-8.236e+01
Information Content per bp:1.678
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif12.02%
Number of Background Sequences with motif125.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets44.4 +/- 21.0bp
Average Position of motif in Background49.8 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:HTATAAARGSCGCSSG
GTATAAAAGGCGGGG-
 G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:HTATAAARGSCGCSSG
GTATAAAAGGCGGGG-
 G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--HTATAAARGSCGCSSG
GNCTATAAAAGG------
 A C G T A C G T G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----HTATAAARGSCGCSSG
NANTTATATATAANGN-----
 A C G T A C G T A C G T A C G T A C G T G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A A C G T A C G T A C G T A C G T A C G T

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----HTATAAARGSCGCSSG
ATGGGATATATCCGCCT----
 A C G T A C G T A C G T A C G T A C G T G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-HTATAAARGSCGCSSG
GCAATAAAA--------
 A C G T G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--HTATAAARGSCGCSSG
CCYMATAAAA--------
 A C G T A C G T G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--HTATAAARGSCGCSSG
NCYAATAAAA--------
 A C G T A C G T G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---HTATAAARGSCGCSSG
AAGCCATAAAA--------
 A C G T A C G T A C G T G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----HTATAAARGSCGCSSG
TAAGATTATAATACGG-----
 A C G T A C G T A C G T A C G T A C G T G C T A A C G T C G T A A C G T C G T A C G T A C T G A T C G A C T A G A T C G T A G C T A C G A T G C A T C G A T G C A T C G
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G A C G T A C G T A C G T A C G T A C G T