Information for 4-RYCAARAGGAGAC (Motif 6)

C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C
Reverse Opposite:
A C T G A C G T A G T C A C G T A G T C A G T C A C G T A G C T A C G T A C G T A C T G T C G A A G C T
p-value:1e-13
log p-value:-3.099e+01
Information Content per bp:1.901
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.2 +/- 24.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RYCAARAGGAGAC-----
-NTNNNAGGAGTCTCNTN
 C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---RYCAARAGGAGAC--
WNAGTCADAVTGAAACTN
 A C G T A C G T A C G T C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C A C G T A C G T
G C A T T A C G C G T A A T C G G C A T T A G C G C T A C G T A G C T A T G C A C G A T T C A G C T G A T C G A T C G A T A G C G A C T T C A G

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RYCAARAGGAGAC
GAGGTCAAAAGGTCA-
 A C G T A C G T A C G T C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T

Rarg/MA0859.1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RYCAARAGGAGAC
AAGGTCAAAAGGTCAA
 A C G T A C G T A C G T C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Rarb/MA0857.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----RYCAARAGGAGAC
AAAGGTCAAAAGGTCA-
 A C G T A C G T A C G T A C G T C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T

PB0033.1_Irf3_1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RYCAARAGGAGAC--
-GAGAACCGAAACTG
 C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C A C G T A C G T
A C G T A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--RYCAARAGGAGAC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

SCRT2/MA0744.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RYCAARAGGAGAC
ATGCAACAGGTGG-
 A C G T C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RYCAARAGGAGAC-
GAGCAACAGGTGGTT
 A C G T C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RYCAARAGGAGAC---
TCTCAAAGGTCACCTG
 C T G A A G C T A G T C C G T A C G T A C T G A C G T A A C T G A C T G C G T A A C T G C G T A G T A C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G