Information for 9-AGGCCATTCA (Motif 18)

C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A
Reverse Opposite:
A C G T C T A G C T G A C G T A C A G T A C T G A C T G G A T C A T G C C G A T
p-value:1e-9
log p-value:-2.236e+01
Information Content per bp:1.833
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif110.2
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets55.1 +/- 27.4bp
Average Position of motif in Background51.0 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGGCCATTCA
ACTAGCCAATCA
 A C G T A C G T C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGGCCATTCA-
-GGCCATTAAC
 C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AGGCCATTCA-------
---ACATTCATGACACG
 C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGCCATTCA------
GACCACATTCATACAAT
 A C G T C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGGCCATTCA-
-AGCCAATCGG
 C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGCCATTCA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGGCCATTCA-
---CCAATCAA
 C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGCCATTCA----
GGAGGTCATTAATTAT
 A C G T A C G T C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A A C G T A C G T A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGGCCATTCA--
-AGCCACTCAAG
 C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A A C G T A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGGCCATTCA
TRAGGTCA----
 A C G T A C G T C G T A A T C G C T A G T G A C A G T C G C T A C G A T A G C T A G T C G T C A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T