Information for 20-TGKAGKAACCTRA (Motif 37)

A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A
Reverse Opposite:
A C G T A G C T C G T A A C T G A C T G A C G T A G C T T G A C A G T C A C G T G T A C A G T C C G T A
p-value:1e-8
log p-value:-1.924e+01
Information Content per bp:1.877
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets52.3 +/- 21.6bp
Average Position of motif in Background67.3 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:TGKAGKAACCTRA---
----GWAAYHTGAKMC
 A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TGKAGKAACCTRA---
----GWAAYHTGABMC
 A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGKAGKAACCTRA
TGACCTNTAGTAACCC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGKAGKAACCTRA
NATGTTGCAA-----
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGKAGKAACCTRA
TCTTTCGAGGAATTTG-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A
C G A T G A T C G A C T C G A T C G A T A G T C A C T G C G T A T C A G C A T G C G T A G C T A G A C T G C A T G A C T T A C G A C G T

PB0162.1_Sfpi1_2/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGKAGKAACCTRA
CAAATTCCGGAACC---
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A
G T A C G C T A C T G A G C T A G C A T C G A T G T A C T G A C T C A G T C A G C G T A G C T A G T A C G T A C A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGKAGKAACCTRA
NGCTTTCTAGGAAN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A A C G T A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:8
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----TGKAGKAACCTRA-
TGACCTAAAGTAACCTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TGKAGKAACCTRA--------
-GAAGTANCACGAATNMRAGT
 A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TGKAGKAACCTRA
GGGAGGACNG---
 A C G T A C T G A C T G C G T A A C T G A C T G C T G A C G T A G T A C A G T C A C G T T C A G C G T A
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T