Information for 15-GRAMYWATTCAGA (Motif 29)

A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A
Reverse Opposite:
G A C T A G T C A C G T A C T G C G T A C G T A A C G T C G A T T C G A A C G T A C G T A G T C A G T C
p-value:1e-9
log p-value:-2.073e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.8 +/- 20.4bp
Average Position of motif in Background45.1 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GRAMYWATTCAGA
--AATAATT----
 A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A
A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GRAMYWATTCAGA-
-----NATTCAAAT
 A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GRAMYWATTCAGA----
GACCACATTCATACAAT
 A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GRAMYWATTCAGA
ATGCATAATTCA--
 A C G T A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GRAMYWATTCAGA----
-AATCAATTCAATAATT
 A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GRAMYWATTCAGA-
ATAAACAATTAAACA
 A C G T A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GRAMYWATTCAGA-----
----ACATTCATGACACG
 A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PH0028.1_En1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GRAMYWATTCAGA-
GCGAACTAATTAATGC
 A C G T A C G T A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

PH0006.1_Barhl2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GRAMYWATTCAGA-
AAAAACCAATTAAGAA
 A C G T A C G T A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PH0153.1_Prop1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GRAMYWATTCAGA---
CGAATTAATTAAGAAAC
 A C G T A C T G C T A G C G T A G T C A A G C T C G T A C G T A A C G T A C G T A G T C C G T A A C T G C G T A A C G T A C G T A C G T
T G A C T C A G T G C A T C G A G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A C T G C G T A C G T A C T G A G A T C