Information for 13-GCGKCACAATGGA (Motif 26)

A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
Reverse Opposite:
A C G T A G T C A G T C C G T A A G C T A C G T T A C G A C G T T A C G G T A C T A G C A C T G A T G C
p-value:1e-9
log p-value:-2.125e+01
Information Content per bp:1.713
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif71.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets57.2 +/- 21.6bp
Average Position of motif in Background49.5 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GCGKCACAATGGA
----AACAAAGG-
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GCGKCACAATGGA
---GAACAATGGN
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GCGKCACAATGGA
----RACAAWGG-
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCGKCACAATGGA
--VRAACAATGG-
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCGKCACAATGGA
--VRRACAAWGG-
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCGKCACAATGGA
---RAACAATGGN
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCGKCACAATGGA
---GAACAATGG-
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCGKCACAATGGA----
NNTNNACAATGGGANNN
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCGKCACAATGGA
----GACAATGNN
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCGKCACAATGGA
-----ACAAAG--
 A T C G G T A C A T C G C A T G A G T C G T C A A G T C C G T A T C G A C G A T C T A G A C T G G T C A
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T