Information for 1-GCCACCAGRGGGCRCC (Motif 2)

C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C
Reverse Opposite:
C T A G A T C G A G C T A C T G G T A C A G T C G T A C A G C T A G T C C G A T C T A G A T C G A C G T A C T G A T C G G T A C
p-value:1e-31
log p-value:-7.309e+01
Information Content per bp:1.768
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif5.22%
Number of Background Sequences with motif135.1
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets58.2 +/- 21.0bp
Average Position of motif in Background51.3 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCCACCAGRGGGCRCC----
GCCASCAGGGGGCGCYVNNG
 C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--GCCACCAGRGGGCRCC-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--GCCACCAGRGGGCRCC--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCACCAGRGGGCRCC
-TCACCTCTGGGCAG-
 C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C
A C G T G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCCACCAGRGGGCRCC---
--NNNAAGGGGGCGGGNNN
 C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCACCAGRGGGCRCC
DCHCAGCAGGRGGCC--
 A C G T C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCACCAGRGGGCRCC
---AACAGATGGC---
 C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCACCAGRGGGCRCC
GGTCANYTGAGGWCA--
 A C G T C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCCACCAGRGGGCRCC-----
-----TTGGGGGCGCCCCTAG
 C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCACCAGRGGGCRCC
CACCCCCGGGGGGG---
 A C G T C A T G A T G C A G T C C G T A A T G C G A T C C G T A A C T G C T G A C A T G A C T G A C T G A G T C C T G A T A G C G A T C
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T A C G T