Information for 9-TCATGAAGTYWTTTGG (Motif 13)

A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
Reverse Opposite:
A T G C A G T C C T G A C G T A C G T A C G A T T C G A C G T A T A G C A G C T C G A T G T A C C G T A C A G T A C T G C T G A
p-value:1e-11
log p-value:-2.625e+01
Information Content per bp:1.722
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.4 +/- 22.1bp
Average Position of motif in Background21.3 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0172.1_Tlx2/Jaspar

Match Rank:1
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TCATGAAGTYWTTTGG
AANTTATTAATTAATTA--
 A C G T A C G T A C G T A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
G C A T C G T A C T A G G A C T G C A T C G T A C G A T G A C T C G T A C G T A G C A T C G A T C T G A G C T A G A C T C G A T T G C A A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TCATGAAGTYWTTTGG-
-CNTTAAGTACTTAANG
 A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G A C G T
A C G T G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PH0088.1_Isl2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCATGAAGTYWTTTGG
AAATTAATTGATTTNG
 A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
C T G A G C T A G T C A G A C T G C A T C G T A C G T A A C G T A C G T C T A G T C G A C A G T C A G T C A G T C G A T C A T G

Hoxd8/MA0910.1/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TCATGAAGTYWTTTGG
NAGCCATTAATTANTTA--
 A C G T A C G T A C G T A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A A C G T A C G T

PH0080.1_Hoxd8/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TCATGAAGTYWTTTGG
NAGCCATTAATTANTTA--
 A C G T A C G T A C G T A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TCATGAAGTYWTTTGG
GGAGGTCATTAATTAT-----
 A C G T A C G T A C G T A C G T A C G T A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0058.1_Hoxb3/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TCATGAAGTYWTTTGG
TNNNACTAATTAGNTCA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
G C A T G A T C A G T C G T C A T C G A A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A T G C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCATGAAGTYWTTTGG
NNATNAATTGTTTNN-
 A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T A C G T

PH0146.1_Pou3f1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TCATGAAGTYWTTTGG
AATTAATTAATTAATTC--
 A C G T A C G T A C G T A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TCATGAAGTYWTTTGG
---TTAAGTGCTT---
 A G C T G T A C G T C A C G A T C A T G C G T A C T G A A C T G A C G T A G C T G C T A A C G T A C G T A G C T T A C G A T C G
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T