Information for 3-AACAAGGGAGCAA (Motif 11)

C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
Reverse Opposite:
A G C T A C G T A T C G A G T C A C G T A G T C T A G C A G T C A C G T A C G T A C T G A C G T C G A T
p-value:1e-10
log p-value:-2.458e+01
Information Content per bp:1.833
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.1 +/- 26.0bp
Average Position of motif in Background45.6 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:AACAAGGGAGCAA--
-----GGGAGGACNG
 C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AACAAGGGAGCAA
AACAAAGG-----
 C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AACAAGGGAGCAA
ATAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AACAAGGGAGCAA
GAACAATGGN----
 A C G T C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AACAAGGGAGCAA
AGAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AACAAGGGAGCAA
RACAAWGG-----
 C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AACAAGGGAGCAA
-----CGGAGC--
 C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AACAAGGGAGCAA
GGAGAAAGGTGCGA
 A C G T C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AACAAGGGAGCAA
VRAACAATGG-----
 A C G T A C G T C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AACAAGGGAGCAA
RNAACAATGG-----
 A C G T A C G T C G T A C G T A T G A C C G T A C G T A A C T G A T C G A C T G C G T A A C T G T A G C G T C A C T G A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T