Information for 14-GCAGGCAAAGCGACTT (Motif 30)

A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T
Reverse Opposite:
T C G A C T G A C T A G A G C T T A G C A T C G A G T C G A C T A G C T G C A T A C T G T A G C T G A C A C G T T C A G T A G C
p-value:1e-6
log p-value:-1.599e+01
Information Content per bp:1.547
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif465.6
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets52.6 +/- 26.5bp
Average Position of motif in Background48.6 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0113.1_Nkx2-4/Jaspar

Match Rank:1
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GCAGGCAAAGCGACTT------
------TAAGCCACTTGAAATT
 A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAAAGCGACTT
TBGCACGCAA--------
 A C G T A C G T A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:3
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GCAGGCAAAGCGACTT------
------TAAGCCACTTAACATT
 A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCAGGCAAAGCGACTT
CCAGGAACAG------
 A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:5
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GCAGGCAAAGCGACTT------
------TAAGCCACTTGAATTT
 A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GCAGGCAAAGCGACTT------
------TAAGCCACTTGAAATT
 A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GCAGGCAAAGCGACTT------
-----CTTAACCACTTAAGGAT
 A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAAAGCGACTT
TCAGNGAGCGTGAC--
 A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCAAAGCGACTT
NACAGGAAAT-------
 A C G T A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAAAGCGACTT----
YCAGGCWCAGTACCAGGCTC
 A T C G A G T C G T C A A C T G A T C G T G A C C G T A T C G A C T G A C T A G T A G C A T C G T C G A A G T C G A C T A C G T A C G T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C