Information for 25-CAGACTACAGCAC (Motif 56)

A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A C G T A C T G
p-value:1e-3
log p-value:-7.550e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.7 +/- 7.7bp
Average Position of motif in Background46.3 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTACAGCAC
BCAGACWA------
 A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAGACTACAGCAC
-AAACCACAGC--
 A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGACTACAGCAC
NAAACCACAG---
 A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAGACTACAGCAC--
CAAACAACAACACCT
 A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTACAGCAC
CCAGACRSVB----
 A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGACTACAGCAC
-AAACCACAGAN-
 A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGACTACAGCAC
NWAACCACADNN-
 A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTACAGCAC
CCAGACAG------
 A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGACTACAGCAC---------
--RACTACAACTCCCAGVAKGC
 A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CAGACTACAGCAC
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A G T C C G T A A C T G A G T C C G T A A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T