Information for 5-CCATGAAGAG (Motif 30)

G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G
Reverse Opposite:
A G T C A G C T G T A C A G C T A G C T A T G C G T C A A C G T C T A G A C T G
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.841
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.41%
Number of Background Sequences with motif180.2
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets65.8 +/- 28.5bp
Average Position of motif in Background54.2 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0008.1_MADS_class/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCATGAAGAG
CCATATATGG
 G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCATGAAGAG-
KCCAAAAATAGC
 A C G T G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G A C G T
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCATGAAGAG
GGCCATTAAC--
 A C G T A C G T G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCATGAAGAG-
GCTATAAATAGC
 A C G T G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G A C G T
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCATGAAGAG
CCAAAAATAG
 G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

MEF2D/MA0773.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCATGAAGAG-
ACTATAAATAGA
 A C G T G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G A C G T
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCATGAAGAG
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCATGAAGAG
AAGCCATAAAA--
 A C G T A C G T A C G T G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCATGAAGAG-
TCTAAAAATAGA
 A C G T G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G A C G T
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCATGAAGAG-
GCTAAAAATAGC
 A C G T G T A C A G T C C G T A A C G T T A C G C T G A C T G A C A T G C T G A A C T G A C G T
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C