Information for 9-CCTGTGTGHTBTCTCT (Motif 20)

G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C T G G C T A T A C G G T C A C A G T G T A C C G T A A G T C G C T A G T A C C G T A C T A G A C T G
p-value:1e-9
log p-value:-2.288e+01
Information Content per bp:1.770
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.7 +/- 21.0bp
Average Position of motif in Background61.4 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCTGTGTGHTBTCTCT
GYCTGGYYTNTGTCA--
 A C G T G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTGTGTGHTBTCTCT
NNGCGTGTGTGCNGCN---
 A C G T A C G T A C G T G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCTGTGTGHTBTCTCT
CTTGAGTGGCT-----
 G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CCTGTGTGHTBTCTCT
NNNNTTGTGTGCTTNN---
 A C G T A C G T A C G T G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCTGTGTGHTBTCTCT
GCTGTG----------
 G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCTGTGTGHTBTCTCT
CCTTTGTTTT------
 G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCTGTGTGHTBTCTCT
-TTAAGTGCTT-----
 G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CCTGTGTGHTBTCTCT
--TGCGTG--------
 G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CCTGTGTGHTBTCTCT
-TTRAGTGSYK-----
 G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CCTGTGTGHTBTCTCT
NCNTTTGTTATTTNN--
 A C G T G T A C A G T C A C G T A C T G C G A T A C T G A C G T A C T G G T C A A C G T A T C G C A G T A G T C C G A T G T A C A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T A C G T