Information for 6-GCAVACGAGCGCG (Motif 9)

A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G G T A C A T C G A G T C A C G T A G T C A C T G A C G T A G T C C G A T A C T G A G T C
p-value:1e-10
log p-value:-2.460e+01
Information Content per bp:1.867
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.1 +/- 21.3bp
Average Position of motif in Background56.7 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0044.1_Mtf1_1/Jaspar

Match Rank:1
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GCAVACGAGCGCG
NNTTTGCACACGGCCC--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C A C G T A C G T

PB0095.1_Zfp161_1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAVACGAGCGCG---
NCANGCGCGCGCGCCA
 A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G A C G T A C G T A C G T
G C A T G A T C C T G A C T A G C T A G G A T C T C A G G A T C C T A G A G T C C T A G A G T C T A C G G A T C G A T C G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAVACGAGCGCG
CCAGACRSVB---
 A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCAVACGAGCGCG--
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCAVACGAGCGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCAVACGAGCGCG----
--ATAAGGGCGCGCGAT
 A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCAVACGAGCGCG-----
-NNNAAGGGGGCGGGNNN
 A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GCAVACGAGCGCG
AGCGGCACACACGCAA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCAVACGAGCGCG----
--ATAAAGGCGCGCGAT
 A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GCAVACGAGCGCG
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A T A C G C G T A G T A C A C T G G T C A A C T G A T G C A C T G A G T C A C T G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T