Information for 5-GGGGCCCGTGACC (Motif 5)

A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C
Reverse Opposite:
A T C G A T C G A C G T A G T C C G T A G T A C A C T G A C T G A C T G A G T C A G T C A G T C A G T C
p-value:1e-11
log p-value:-2.661e+01
Information Content per bp:1.935
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.8 +/- 33.7bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mitf/MA0620.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GGGGCCCGTGACC
---NCACGTGACN
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C
A C G T A C G T A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGGGCCCGTGACC-
NAGGTCANTGACCT
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Arntl/MA0603.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GGGGCCCGTGACC
---NCACGTGACN
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C
A C G T A C G T A C G T C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGGGCCCGTGACC-
--TGACCTTGACCT
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C A C G T
A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

USF1/MA0093.2/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGGGCCCGTGACC
--GCCACGTGACC
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C
A C G T A C G T T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C

BHLHE41/MA0636.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGGGCCCGTGACC
--GTCACGTGAC-
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C
A C G T A C G T T C A G C A G T T A G C T C G A A G T C T C A G C G A T T A C G G T C A A G T C A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GGGGCCCGTGACC----
----CNNTTGACCTTTG
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GGGGCCCGTGACC
-----NCGTGACN
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C
A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGGGCCCGTGACC-
--TGACCTTGACCT
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C A C G T
A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

HEY2/MA0649.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGGGCCCGTGACC
--GGCACGTGNC-
 A C T G A C T G C T A G A C T G A G T C A G T C A G T C A C T G A C G T A C T G C G T A A T G C A T G C
A C G T A C G T A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T