Information for 7-TCTCTWAACC (Motif 34)

A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
Reverse Opposite:
A C T G T A C G A C G T A C G T C G A T C T G A A C T G T C G A A C T G T G C A
p-value:1e-6
log p-value:-1.410e+01
Information Content per bp:1.717
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.46%
Number of Background Sequences with motif704.4
Percentage of Background Sequences with motif1.49%
Average Position of motif in Targets42.3 +/- 24.6bp
Average Position of motif in Background51.4 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCTCTWAACC
AGGTCTCTAACC-
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCTCTWAACC
ACCACTTAA--
 A C G T A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TCTCTWAACC
BCMATTAG--
 A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCTCTWAACC
ACCACTTAA--
 A C G T A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCTCTWAACC
AASCACTCAA--
 A C G T A C G T A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCTCTWAACC
NSCACTYVAV-
 A C G T A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TCTCTWAACC--
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

ISL2/MA0914.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCTCTWAACC
GCACTTAA--
 A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TCTCTWAACC--
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCTCTWAACC
AGCCACTCAAG-
 A C G T A C G T A C G T A G T C A G C T A G T C A G C T C G T A C G T A T G C A A T G C T G A C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T