Information for 8-GGCCAAGTAA (Motif 15)

C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
Reverse Opposite:
A C G T A G C T G T C A A G T C A C G T A C G T A C T G A C T G A G T C A G T C
p-value:1e-8
log p-value:-1.869e+01
Information Content per bp:1.880
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif22.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets46.6 +/- 24.7bp
Average Position of motif in Background57.2 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAGTAA
CGTGCCAAG---
 A C G T A C G T C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGCCAAGTAA
TGCCAA----
 C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGCCAAGTAA
GGTGCCAAGT--
 A C G T A C G T C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGCCAAGTAA
AAGGCAAGTGT
 A C G T C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGCCAAGTAA
AGGCCTAG---
 A C G T C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGCCAAGTAA
ACTAGCCAATCA-
 A C G T A C G T A C G T C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGCCAAGTAA-
AGGTCAAGGTCA
 A C G T C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGCCAAGTAA
TTGCCAAG---
 A C G T C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGCCAAGTAA
--CCAATTAA
 C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

RAX/MA0718.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCCAAGTAA-
-GCCAATTAAC
 C T A G A C T G T G A C A G T C C G T A C G T A A C T G C A G T C T G A C G T A A C G T
A C G T T C A G A G T C G A T C G C T A G T C A C G A T G A C T C G T A C T G A G A T C