Information for 3-YGCCMCCTGGHGG (Motif 3)

A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G
Reverse Opposite:
A G T C A G T C C A G T A T G C G A T C C G T A A C T G C T A G A C T G A C T G A C T G G T A C T C A G
p-value:1e-29
log p-value:-6.817e+01
Information Content per bp:1.682
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.30%
Number of Background Sequences with motif355.2
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets49.1 +/- 22.6bp
Average Position of motif in Background51.0 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.89
Offset:-6
Orientation:forward strand
Alignment:------YGCCMCCTGGHGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---YGCCMCCTGGHGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.84
Offset:-4
Orientation:forward strand
Alignment:----YGCCMCCTGGHGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGGHGG-
CACCCCCGGGGGGG
 A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGGHGG--
CCCCCCCGGGGGGGT
 A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGGHGG--
CCCCCCCGGGGGGGT
 A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGGHGG--
GACCCCCCGCTGTGC
 A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGGHGG
TGCCCCCGGGCA-
 A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:YGCCMCCTGGHGG
-GCCATCTGTT--
 A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGGHGG--
GGCCYCCTGCTGDGH
 A G T C C A T G A G T C A G T C T G A C A G T C G T A C C G A T C T A G A T C G G T C A A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C