Information for 13-GACAGTCTTC (Motif 20)

A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A A C T G C G T A A G T C A C G T A C T G A C G T G T A C
p-value:1e-8
log p-value:-2.061e+01
Information Content per bp:1.937
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif10.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets63.7 +/- 18.2bp
Average Position of motif in Background60.6 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GACAGTCTTC-
-----GCTTCC
 A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GACAGTCTTC
--CTGTCTGG
 A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GACAGTCTTC-----
CGAACAGTGCTCACTAT
 A C G T A C G T A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GACAGTCTTC
VBSYGTCTGG
 A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GACAGTCTTC
TTGACAG-----
 A C G T A C G T A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GACAGTCTTC
CACAGN----
 A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACAGTCTTC
TTGACAGC----
 A C G T A C G T A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GACAGTCTTC--------
--CCGTCTTCCCCCTCAC
 A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACAGTCTTC
TTGACAGG----
 A C G T A C G T A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GACAGTCTTC-
TGACAGGTGTCA
 A C G T A C T G C G T A A G T C G T C A A C T G A C G T A G T C A C G T A C G T A G T C A C G T
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A